CKDdb-logoWelcome to CKDdb

The Chronic Kidney Disease database CKDdb is an integrated and clustered information resource that covers multi-omic studies (microRNA, genomics, peptidomics, proteomics and metabolomics) of chronic kidney disease (CKD), disease-related and diseases leading to this trait.

This resource was built by mining the existing literature and afterwards was performed a manual curation of the collected data. In order to deal with the high heterogeneity and diversity of the gathered data, a specific ontology was applied to tie together and harmonise multi-level omic studies based on gene and protein clusters (CluSO) and mapping of orthologous genes (OMAP) across species.

This database was intentionally built to allow disease pathway analysis by data-driven using a system approach, which is much more amenable and has a greater potential to provide an unbiased and novel testable hypothesis as an end-result.

The CKDdb database is a component of the work-package #1 (WP1) of the iMODE-CKD consortium that aims for the identification of the molecular determinants of established CKD. The database will incorporate existing knowledge and de novo generated data from our research partners, in order to yield biological meaning by integrating all available information and therefore has the potential to unravel and allow an in-depth understanding of the key molecular events that modulate CKD progression.

The database can be accessed by:

Query
Search for: Molecules Tissue or Source Disease
Case sensitive

or Browse (client-side search)
0000000000000000000 global_scheme study sample tissue disease molecules detailed search2 molecules grouped search peptidomics search browse

Select first letter of gene name to jump to the right entry list
A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 0 | other

Current stats:

No. of total entries with extended information: 12462 No. of unique (non-redundant) molecules: 16884 Total no. of samples in Demographics file: 187
No. of unique studies with extended information: 12 Total no. of studies in Study reference file/table: 377 No. of unique samples in Demographics file: 187
Total no. of molecule entries (redundant): 49393 Total no. of unique studies: 377 No. of entries in Peptidomics file: 1396

Submit data:

Google forms Excel spreadsheet
  • Demographics and molecular data (non-fragmented) 
  • Peptidomics data 
  • Demographics and molecular data (non-fragmented) 
  • Peptidomics data 
  • sending it to us in the first instance.


  • sponsors imode-ckd 7framework university of glasgow
    Compile date 08-30-2016© iMODE-CKD consortium